PUDU — Protocol Unified Design Unit
=====================================

.. image:: https://img.shields.io/pypi/v/pudupy
   :alt: PyPI version

PUDU is a Python package for automating synthetic biology liquid-handling
workflows on the Opentrons OT-2 robot.  It covers the full three-stage
pipeline — **DNA assembly → bacterial transformation → agar plating** — and
can generate both automated OT-2 protocols and human-readable Markdown bench
guides from the same SBOL-style JSON input.

.. toctree::
   :maxdepth: 2
   :caption: User Guide

   guide/index

.. toctree::
   :maxdepth: 2
   :caption: API Reference

   api/index

Indices and search
------------------

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`